Genomics in the Cloud

Genomics in the Cloud: Using Docker, GATK, and WDL in Terra
English | April 2nd, 2020 | ISBN: 1491975199 | 506 Pages | EPUB (True/Retail Copy) | 28.01 MB

Data in the genomics field is booming. In just a few years, organizations such as the National Institutes of Health (NIH) will host 50+ petabytes-or over 50 million gigabytes-of genomic data, and they're turning to cloud infrastructure to make that data available to the research community. How do you adapt analysis tools and protocols to access and analyze that volume of data in the cloud?

With this practical book, researchers will learn how to work with genomics algorithms using open source tools including the Genome Analysis Toolkit (GATK), Docker, WDL, and Terra. Geraldine Van der Auwera, longtime custodian of the GATK user community, and Brian O'Connor of the UC Santa Cruz Genomics Institute, guide you through the process. You'll learn by working with real data and genomics algorithms from the field.

This book covers:
Essential genomics and computing technology background
Basic cloud computing operations
Getting started with GATK, plus three major GATK Best Practices pipelines
Automating analysis with scripted workflows using WDL and Cromwell
Scaling up workflow execution in the cloud, including parallelization and cost optimization
Interactive analysis in the cloud using Jupyter notebooks
Secure collaboration and computational reproducibility using Terra


[Fast Download] Genomics in the Cloud

Related eBooks:
Building Digital Ecosystem Architectures
SELinux System Administration - Second Edition Ed 2
Learning Banana Pi
Julia for Data Science
GATE Computer Science and Information Technology 2020
Post-Quantum Cryptography
Rogers Cadenhead - How to Use the Internet (8th Edition)
Computer Vision, Imaging and Computer Graphics - Theory and Applications: 12th International Joint C
Incident Response and Computer Forensics
Jetzt lerne ich VBA mit Access
Smartphones & Tablets for Seniors
Handbook of Swarm Intelligence: Concepts, Principles and Applications
Copyright Disclaimer:
This site does not store any files on its server. We only index and link to content provided by other sites. Please contact the content providers to delete copyright contents if any and email us, we'll remove relevant links or contents immediately.